This study poses the diagnosis of the pygmies education in the South Kivu province in the Democratic Republic of the Congo during the period from 2005-2006 to 2010-2011. It focuses on the school statistics and the qualitative data collected from directors and teachers of primary and secondary schools, pygmies pupils parents, local and international Non Governmental Organizations representatives working in the four territories where 65 % of pygmy population concentrates. It comes out from the analysis made on these data that despite the fact that they are very weak, the sizes of pygmies pupils have increased each year four times more quickly than those of non pygmies pupils, that is to say 12% of the increasing rate versus 3%. This important expansion of pygmies children education goes unfortunately with an irregular school attendance, which emerges, in general, on an important school disconnection, representing, at least, 34% of enrolled sizes. If the school disconnection is fundamentally explained by poverty, the discrimination that pygmies undergo in their milieu, as well as their attachment on their culture are not withdrawal. In addition to these difficulties, the South Kivu pygmies ‘education also faces an imbalance between education demand and supply and mainly the type of school organized for these people.